

Uncovering the principles of molecular design for biology, medicine and biotechnology
Our research
We are a group of energetic scientists driven to understand and improve our relationship with the natural world. Our molecule of interest, RNA, is similar to DNA, but is more versatile within the cell. We study how the structure of RNA plays a role in its cellular jobs, how cells use molecules like RNA to monitor and respond to their changing environments, and how we can use these molecules in cell-free systems to monitor our own environments for health and sustainability.

News
Northwestern University scientists sprint to develop new kind of rapid coronavirus test, Chicago Tribune
Simple test could prevent fluoride-related disease, Science Daily

Recent Publications
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Developing, Characterizing, and Modeling CRISPR-Based Point-of-Use Pathogen Diagnostics
J. K. Jung, K. S. Dreyer, K. E. Dray, J. J. Muldoon, J. George, S. Shirman, M. D. Cabezas, A. E. d’Aquino, M. S. Verosloff, K. Seki, G. A. Rybnicky, K. K. Alam, N. Bagheri, M. C. Jewett, J. N. Leonard, N. M. Mangan, J. B. Lucks. ACS Synthetic Biology (2025). doi: 10.1021/acssynbio.4c00469
Links: Journal, PDF, BioRxivAbout
We developed and optimized a one-pot NASBA-Cas13a assay for rapid, point-of-care nucleic acid detection, combining isothermal amplification of viral RNA with Cas13a-based detection. By formulating NASBA in-house, establishing design rules for primers and guide RNAs, and integrating high-throughput experiments with mechanistic modeling, we achieved highly sensitive SARS-CoV-2 detection and built a framework to understand and optimize nucleic acid detection reactions.
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An Automated Cell-Free Workflow for Transcription Factor Engineering
H. M. Ekas, B. Wang, A. D. Silverman, J. B. Lucks, A. S. Karim, M. C. Jewett. ACS Synthetic Biology (2024). doi: 10.1021/acssynbio.4c00471
Links: Journal, PDFAbout
We designed a generalizable, automated cell-free workflow to optimize gene expression assays, enabling rapid design-build-test-learn cycles with high precision and flexibility. Using this platform, we engineered and screened thousands of transcription factor variants for mercury and cadmium biosensors in under 48 hours, improving sensitivity, selectivity, and dynamic range, and demonstrating a scalable approach to accelerate synthetic biology workflows.
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Ten Years of the Synthetic Biology Summer Course at Cold Spring Harbor Laboratory
K. A. Haynes, L. B. Andrews, C. L. Beisel, J. Chappell, C. E. Cuba Samaniego, J. E. Dueber, M. J. Dunlop, E. Franco, J. B. Lucks, V. Noireaux, D. F. Savage, P. A. Silver, M; Smanski, E. Young. ACS Synthetic Biology (2024). doi: 10.1021/acssynbio.4c00276
Links: Journal, PDFAbout
In this review, we study the Cold Spring Harbor Laboratory Summer Course on Synthetic Biology, an immersive program that combines hands-on lab training, research rotations, and expert seminars. We describe the history, development, and structure of the course, and discuss how elements of the course might inform the development of other short courses in synthetic biology.
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Engineering a PbrR-Based Biosensor for Cell-Free Detection of Lead at the Legal Limit
H. M. Ekas, B. Wang, A. D. Silverman, J. B. Lucks, A. S. Karim, M. C. Jewett. ACS Synthetic Biology (2024). doi: 10.1021/acssynbio.4c00456
Links: Journal, PDFAbout
We engineered a rapid cell-free platform to create allosteric transcription factor biosensors with enhanced sensitivity, selectivity, and dynamic range. Using this approach, we redesigned PbrR to detect lead at environmentally relevant concentrations, creating a practical, on-demand cell-free biosensor, and demonstrating a workflow that can be applied to engineer a wide range of aTFs.
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Self-reported anticipated harm from drinking water across 141 countries
J. D. Miller, C. Staddon, A. Salzberg, J. B. Lucks, W. B. de Bruin, S. L. Young. Nature Communications (2024). doi: 10.1038/s41467-024-51528-x
Links: Journal, PDFAbout
This study analyzes survey data from 148,585 individuals across 141 countries to understand perceptions of drinking water safety and self-reported anticipated harm. We find that over half of adults expect serious harm from drinking water, highlighting the importance of trust and governance in promoting safe and sustainable water use.




