10 Key Publications

1.

Point-of-use detection of environmental fluoride via a cell-free riboswitch-based biosensor.
W. Thavarajah, A. D. Silverman, M. S. Verosloff, N. Kelley-Loughnane, M. C. Jewett, J. B. Lucks*. ACS Synthetic Biology.(2019)
Links: Journal, BioRxiv, PDF

2.

A ligand-gated strand displacement mechanism for ZTP riboswitch transcription control.
E. J. Strobel*, L. Cheng, K. E. Berman, P. D. Carlson, J. B. Lucks*. Nature Chemical Biology. (2019).
Links: Journal, BioRxiv, PDF

3.

DUETT quantitatively identifies known and novel events in nascent RNA structural dynamics from chemical probing data.
A. Y Xu, A. M Yu, J. B. Lucks, N. Bagheri.* Bioinformatics. (2019).
Links: Journal, PDF

4.

High-throughput determination of RNA structures.
E. J. Strobel#, A. M Yu#, J. B. Lucks. Nature Reviews Genetics. (2018). # = These authors contributed equally
Links: Journal, PDF

5.

Achieving large dynamic range control of gene expression with a compact RNA transcription-translation regulator.
A. M. Westbrook, J. B. Lucks. Nucleic Acids Research. (2017).
Links: Journal, PDF, BioRxiv (Open Access)

6.

Cotranscriptional folding of a riboswitch at nucleotide resolution.
K. E. Watters#, E. J. Strobel#, A. M. Yu, J. T. Lis, J. B. Lucks. Nature Structure and Molecular Biology. (2016). # = Equal contribution
Links: Journal, PDF

7.

Using in-cell SHAPE-Seq and simulations to probe structure-function design principles of RNA transcriptional regulators.
M. K. Takahashi, K. E. Watters, P. M. Gaspar, T. R. Abbott, P. D. Carlson, A. A. Chen, J. B. Lucks. RNA. (2016).
Links: Journal, PDF

8.

Simultaneous characterization of cellular RNA structure and function with in-cell SHAPE-Seq. K. E. Watters, Timothy R. Abbott, J. B. Lucks. Nucleic Acids Research. (2015).
Links: Journal, PDF

9.

Creating Small Transcription Activating RNAs.
J. Chappell, M. K. Takahashi, J. B. Lucks. Nature Chemical Biology. (2015).
Links: Journal, PDF

10.

Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription-translation (TX-TL) systems.
M. K. Takahashi, J. Chappell, C. A. Hayes, Z. Z. Sun, J. Kim, V. Singhal, K. J. Spring, S. Al-Khabouri, C. P. Fall, V. Noireaux, R. M. Murray, J. B. Lucks. ACS Synthetic Biology. (2014). doi: 10.1021/sb400206c
Links: Journal, PDF, BioRxiv (Open Access)

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